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    <title>Event-chain Monte Carlo algorithms for hard-sphere systems</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.056704</link>
    <description>Author(s): Etienne P. Bernard, Werner Krauth, and David B. Wilson&lt;br/&gt;In this paper we present the event-chain algorithms, which are fast Markov-chain Monte Carlo methods for hard spheres and related systems. In a single move of these rejection-free methods, an arbitrarily long chain of particles is displaced, and long-range coherent motion can be induced. Numerical s...&lt;br/&gt;[Phys. Rev. E 80, 056704] Published Wed Nov 18, 2009</description>
    <dc:creator>Etienne P. Bernard, Werner Krauth, and David B. Wilson</dc:creator>
    <dc:date>2009-11-18T00:00:00-05:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.056704</dc:identifier>
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    <title>Microcanonical replica exchange molecular dynamics simulation of proteins</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.056703</link>
    <description>Author(s): Parimal Kar, Walter Nadler, and Ulrich H. E. Hansmann&lt;br/&gt;We present microcanonical replica exchange molecular dynamics simulations as an alternative to canonical ones. Its advantage is the easily tunable high acceptance rate for replica exchange. We present the theory, comment on its actual implementation, and demonstrate its application for a common test...&lt;br/&gt;[Phys. Rev. E 80, 056703] Published Wed Nov 18, 2009</description>
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    <dc:date>2009-11-18T00:00:00-05:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
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    <title>Spectral element method for band structures of three-dimensional anisotropic photonic crystals</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.056702</link>
    <description>Author(s): Ma Luo and Qing Huo Liu&lt;br/&gt;A spectral element method (SEM) is introduced for accurate calculation of band structures of three-dimensional anisotropic photonic crystals. The method is based on the finite-element framework with curvilinear hexahedral elements. Gauss-Lobatto-Legendre polynomials are used to construct the basis f...&lt;br/&gt;[Phys. Rev. E 80, 056702] Published Mon Nov 09, 2009</description>
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    <dc:date>2009-11-09T00:00:00-05:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.056702</dc:identifier>
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    <title>Lattice Boltzmann scheme for mixture modeling: Analysis of the continuum diffusion regimes recovering Maxwell-Stefan model and incompressible Navier-Stokes equations</title>
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    <description>Author(s): Pietro Asinari&lt;br/&gt;A finite difference lattice Boltzmann scheme for homogeneous mixture modeling, which recovers Maxwell-Stefan diffusion model in the continuum limit, without the restriction of the mixture-averaged diffusion approximation, was recently proposed [P. Asinari, Phys. Rev. E 77, 056706 (2008)]. The theore...&lt;br/&gt;[Phys. Rev. E 80, 056701] Published Mon Nov 09, 2009</description>
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    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
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    <title>Exact algorithm for sampling the two-dimensional Ising spin glass</title>
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    <description>Author(s): Creighton K. Thomas and A. Alan Middleton&lt;br/&gt;A sampling algorithm is presented that generates spin-glass configurations of the two-dimensional Edwards-Anderson Ising spin glass at finite temperature with probabilities proportional to their Boltzmann weights. Such an algorithm overcomes the slow dynamics of direct simulation and can be used to ...&lt;br/&gt;[Phys. Rev. E 80, 046708] Published Fri Oct 30, 2009</description>
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    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
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    <title>Generalization of the homogeneous nonequilibrium molecular dynamics method for calculating thermal conductivity to multibody potentials</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.047702</link>
    <description>Author(s): Kranthi K. Mandadapu, Reese E. Jones, and Panayiotis Papadopoulos&lt;br/&gt;This work provides a generalization of Evans&#8217; homogeneous nonequilibrium method for estimating thermal conductivity to molecular systems that are described by general multibody potentials. A perturbed form of the usual Nose-Hoover equations of motion is formally constructed and is shown to satisfy...&lt;br/&gt;[Phys. Rev. E 80, 047702] Published Thu Oct 29, 2009</description>
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    <dc:date>2009-10-29T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
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    <title>Accurate simulation dynamics of microscopic filaments using &#8220;caterpillar&#8221; Oseen hydrodynamics</title>
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    <description>Author(s): A. G. Bailey, C. P. Lowe, I. Pagonabarraga, and M. Cosentino Lagomarsino&lt;br/&gt;Microscopic semiflexible filaments suspended in a viscous fluid are widely encountered in biophysical problems. The classic example is the flagella used by microorganisms to generate propulsion. Simulating the dynamics of these filaments numerically is complicated because of the coupling between the...&lt;br/&gt;[Phys. Rev. E 80, 046707] Published Wed Oct 28, 2009</description>
    <dc:creator>A. G. Bailey, C. P. Lowe, I. Pagonabarraga, and M. Cosentino Lagomarsino</dc:creator>
    <dc:date>2009-10-28T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
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    <title>Multiresolution phase extension of a trypsin inhibitor structure from  5&#8194;&#197;  to  2&#8194;&#197;  based on diffraction amplitudes alone</title>
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    <description>Author(s): Xiangan Liu and Wu-Pei Su&lt;br/&gt;For a specific structure of trypsin inhibitor, starting from a 5&#8194;&#197; phase set, about 80% of the 2&#8194;&#197; phases are correctly determined within an error of 18&#176; by applying a multiresolution refinement procedure. The refinement proceeds both in real and reciprocal spaces. In extending the structure ...&lt;br/&gt;[Phys. Rev. E 80, 047701] Published Thu Oct 22, 2009</description>
    <dc:creator>Xiangan Liu and Wu-Pei Su</dc:creator>
    <dc:date>2009-10-22T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.047701</dc:identifier>
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    <title>Parquet approximation for the  4&#215;4  Hubbard cluster</title>
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    <description>Author(s): S. X. Yang, H. Fotso, J. Liu, T. A. Maier, K. Tomko, E. F. D&#8217;Azevedo, R. T. Scalettar, T. Pruschke, and M. Jarrell&lt;br/&gt;We present a numerical solution of the parquet approximation, a conserving diagrammatic approach which is self-consistent at both the single-particle and the two-particle levels. The fully irreducible vertex is approximated by the bare interaction thus producing the simplest approximation that one c...&lt;br/&gt;[Phys. Rev. E 80, 046706] Published Wed Oct 21, 2009</description>
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    <dc:date>2009-10-21T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
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    <title>Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.046705</link>
    <description>Author(s): Daniel K. Shenfeld, Huafeng Xu, Michael P. Eastwood, Ron O. Dror, and David E. Shaw&lt;br/&gt;In computational thermodynamics, a sequence of intermediate states is commonly introduced to connect two equilibrium states. We consider two cases where the choice of intermediate states is particularly important: minimizing statistical error in free-energy difference calculations and maximizing ave...&lt;br/&gt;&lt;img src="http://prola.aps.org/graphics/free2read30x30.gif" width="30" height="30" alt="Free to Read"/&gt;&lt;br/&gt;[Phys. Rev. E 80, 046705] Published Mon Oct 19, 2009</description>
    <dc:creator>Daniel K. Shenfeld, Huafeng Xu, Michael P. Eastwood, Ron O. Dror, and David E. Shaw</dc:creator>
    <dc:date>2009-10-19T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.046705</dc:identifier>
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    <title>Monte Carlo determination of multiple extremal eigenpairs</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.046704</link>
    <description>Author(s): T. E. Booth and J. E. Gubernatis&lt;br/&gt;We present a Monte Carlo algorithm that allows the simultaneous determination of a few extremal eigenpairs of a very large matrix without the need to compute the inner product of two vectors or store all the components of any one vector. The algorithm, a Monte Carlo implementation of a deterministic...&lt;br/&gt;[Phys. Rev. E 80, 046704] Published Fri Oct 16, 2009</description>
    <dc:creator>T. E. Booth and J. E. Gubernatis</dc:creator>
    <dc:date>2009-10-16T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.046704</dc:identifier>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.046703" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Heterogeneous long-range correlated deformation of semiflexible random fiber networks</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.046703</link>
    <description>Author(s): H. Hatami-Marbini and R. C. Picu&lt;br/&gt;The deformation of dense random fiber networks is important in a variety of applications including biological and nonliving systems. In this paper it is shown that semiflexible fiber networks exhibit long-range power-law spatial correlations of the density and elastic properties. Hence, the stress a...&lt;br/&gt;[Phys. Rev. E 80, 046703] Published Fri Oct 16, 2009</description>
    <dc:creator>H. Hatami-Marbini and R. C. Picu</dc:creator>
    <dc:date>2009-10-16T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.046703</dc:identifier>
    <dc:source>Phys. Rev. E 80, 046703</dc:source>
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    <dc:type>article</dc:type>
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    <prism:publicationDate>2009-10-16T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>046703</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
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    <title>Gas-kinetic schemes for direct numerical simulations of compressible homogeneous turbulence</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.046702</link>
    <description>Author(s): Wei Liao, Yan Peng, and Li-Shi Luo&lt;br/&gt;We apply the gas-kinetic scheme (GKS) for the direct numerical simulations (DNSs) of compressible decaying homogeneous isotropic turbulence (DHIT). We intend to study the accuracy, stability, and efficiency of the gas-kinetic scheme for DNS of compressible homogeneous turbulence depending on both fl...&lt;br/&gt;[Phys. Rev. E 80, 046702] Published Wed Oct 14, 2009</description>
    <dc:creator>Wei Liao, Yan Peng, and Li-Shi Luo</dc:creator>
    <dc:date>2009-10-14T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.046702</dc:identifier>
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    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.046701" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Spin dephasing in the dipole field around capillaries and cells: Numerical solution</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.046701</link>
    <description>Author(s): C. H. Ziener, S. Glutsch, P. M. Jakob, and W. R. Bauer&lt;br/&gt;We numerically solve the Bloch-Torrey equation by discretizing the differential operators in real space using finite differences. The differential equation is either solved directly in time domain as initial-value problem or in frequency domain as boundary-value problem. Especially the solution in t...&lt;br/&gt;[Phys. Rev. E 80, 046701] Published Fri Oct 09, 2009</description>
    <dc:creator>C. H. Ziener, S. Glutsch, P. M. Jakob, and W. R. Bauer</dc:creator>
    <dc:date>2009-10-09T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.046701</dc:identifier>
    <dc:source>Phys. Rev. E 80, 046701</dc:source>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.036707" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Single-cluster dynamics for the random-cluster model</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036707</link>
    <description>Author(s): Youjin Deng, Xiaofeng Qian, and Henk W. J. Bl&#246;te&lt;br/&gt;We formulate a single-cluster Monte Carlo algorithm for the simulation of the random-cluster model. This algorithm is a generalization of the Wolff single-cluster method for the q -state Potts model to noninteger values q&gt;1 . Its results for static quantities are in a satisfactory agreement with thos...&lt;br/&gt;[Phys. Rev. E 80, 036707] Published Wed Sep 30, 2009</description>
    <dc:creator>Youjin Deng, Xiaofeng Qian, and Henk W. J. Bl&#246;te</dc:creator>
    <dc:date>2009-09-30T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036707</dc:identifier>
    <dc:source>Phys. Rev. E 80, 036707</dc:source>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.036706" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Algorithms for Brownian first-passage-time estimation</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036706</link>
    <description>Author(s): Artur B. Adib&lt;br/&gt;A class of algorithms in discrete space and continuous time for Brownian first-passage-time estimation is considered. A simple algorithm is derived that yields exact mean first-passage times (MFPTs) for linear potentials in one dimension, regardless of the lattice spacing. When applied to nonlinear ...&lt;br/&gt;[Phys. Rev. E 80, 036706] Published Tue Sep 29, 2009</description>
    <dc:creator>Artur B. Adib</dc:creator>
    <dc:date>2009-09-29T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036706</dc:identifier>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.037702" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Lattice Boltzmann model for axisymmetric thermal flows</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.037702</link>
    <description>Author(s): Q. Li, Y. L. He, G. H. Tang, and W. Q. Tao&lt;br/&gt;A thermal lattice Boltzmann (LB) model is presented for axisymmetric thermal flows in the incompressible limit. The model is based on the double-distribution-function LB method, which has attracted much attention since its emergence for its excellent numerical stability over the multispeed LB method...&lt;br/&gt;[Phys. Rev. E 80, 037702] Published Mon Sep 28, 2009</description>
    <dc:creator>Q. Li, Y. L. He, G. H. Tang, and W. Q. Tao</dc:creator>
    <dc:date>2009-09-28T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.037702</dc:identifier>
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    <title>Dissipative forces for Lagrangian models in computational fluid dynamics and application to smoothed-particle hydrodynamics</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036705</link>
    <description>Author(s): D. Violeau&lt;br/&gt;An investigation of dissipative forces for Lagrangian computational fluid dynamics is conducted from Hamiltonian considerations including energy dissipation for macroscopic systems. It is shown that discrete forces must fulfill particular rules to be in agreement with the fundamentals of Physics. Th...&lt;br/&gt;[Phys. Rev. E 80, 036705] Published Fri Sep 25, 2009</description>
    <dc:creator>D. Violeau</dc:creator>
    <dc:date>2009-09-25T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036705</dc:identifier>
    <dc:source>Phys. Rev. E 80, 036705</dc:source>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.036704" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Comparison of the static and dynamic properties of a semiflexible polymer using lattice Boltzmann and Brownian-dynamics simulations</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036704</link>
    <description>Author(s): Anthony J. C. Ladd, Rahul Kekre, and Jason E. Butler&lt;br/&gt;The aim of this paper is to compare results from lattice Boltzmann and Brownian-dynamics simulations of linear chain molecules. We have systematically varied the parameters that may affect the accuracy of the lattice Boltzmann simulations including grid resolution, temperature, polymer mass, and flu...&lt;br/&gt;[Phys. Rev. E 80, 036704] Published Tue Sep 22, 2009</description>
    <dc:creator>Anthony J. C. Ladd, Rahul Kekre, and Jason E. Butler</dc:creator>
    <dc:date>2009-09-22T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036704</dc:identifier>
    <dc:source>Phys. Rev. E 80, 036704</dc:source>
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  </item>
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    <title>Explicit symplectic integrators for solving nonseparable Hamiltonians</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.037701</link>
    <description>Author(s): Siu A. Chin&lt;br/&gt;By exploiting the error functions of explicit symplectic integrators for solving separable Hamiltonians, I show that it is possible to develop explicit time-reversible symplectic integrators for solving nonseparable Hamiltonians of the product form. The algorithms are unusual in that they are of fra...&lt;br/&gt;[Phys. Rev. E 80, 037701] Published Mon Sep 21, 2009</description>
    <dc:creator>Siu A. Chin</dc:creator>
    <dc:date>2009-09-21T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.037701</dc:identifier>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.036703" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Analysis of the lattice Boltzmann Bhatnagar-Gross-Krook no-slip boundary condition: Ways to improve accuracy and stability</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036703</link>
    <description>Author(s): Joris C. G. Verschaeve&lt;br/&gt;An analytical and numerical analysis of the no-slip boundary condition at walls at rest for the lattice Boltzmann Bhatnagar-Gross-Krook method is performed. The main result of this analysis is an alternative formulation for the no-slip boundary condition at walls at rest. Numerical experiments asses...&lt;br/&gt;[Phys. Rev. E 80, 036703] Published Fri Sep 11, 2009</description>
    <dc:creator>Joris C. G. Verschaeve</dc:creator>
    <dc:date>2009-09-11T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036703</dc:identifier>
    <dc:source>Phys. Rev. E 80, 036703</dc:source>
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    <title>Incorporating forcing terms in cascaded lattice Boltzmann approach by method of central moments</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036702</link>
    <description>Author(s): Kannan N. Premnath and Sanjoy Banerjee&lt;br/&gt;Cascaded lattice Boltzmann method (cascaded-LBM) employs a class of collision operators aiming to stabilize computations and remove certain modeling artifacts for simulation of fluid flow on lattice grids with sizes arbitrarily larger than the smallest physical dissipation length scale [Geier , Phys...&lt;br/&gt;[Phys. Rev. E 80, 036702] Published Fri Sep 11, 2009</description>
    <dc:creator>Kannan N. Premnath and Sanjoy Banerjee</dc:creator>
    <dc:date>2009-09-11T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036702</dc:identifier>
    <dc:source>Phys. Rev. E 80, 036702</dc:source>
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    <title>Simulation of the time evolution of the Wigner function with a first-principles Monte Carlo method</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.036701</link>
    <description>Author(s): M. S. Torres, G. Tosi, and J. M. A. Figueiredo&lt;br/&gt;The implementation of Monte Carlo methods acting in the quantum phase space is hindered by the fact that quantum phase-space information is available only through quasiprobability densities. In this work, we present a first-principles Monte Carlo method employing a hidden variables representation. T...&lt;br/&gt;[Phys. Rev. E 80, 036701] Published Fri Sep 04, 2009</description>
    <dc:creator>M. S. Torres, G. Tosi, and J. M. A. Figueiredo</dc:creator>
    <dc:date>2009-09-04T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.036701</dc:identifier>
    <dc:source>Phys. Rev. E 80, 036701</dc:source>
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    <prism:publicationDate>2009-09-04T00:00:00-04:00</prism:publicationDate>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.026707" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Structuring and sampling complex conformation space: Weighted ensemble dynamics simulations</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.026707</link>
    <description>Author(s): Linchen Gong and Xin Zhou&lt;br/&gt;Based on multiple simulation trajectories, which started from dispersively selected initial conformations, the weighted ensemble dynamics method is designed to robustly and systematically explore the hierarchical structure of complex conformational space through the spectral analysis of the variance...&lt;br/&gt;[Phys. Rev. E 80, 026707] Published Fri Aug 28, 2009</description>
    <dc:creator>Linchen Gong and Xin Zhou</dc:creator>
    <dc:date>2009-08-28T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.026707</dc:identifier>
    <dc:source>Phys. Rev. E 80, 026707</dc:source>
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    <prism:publicationDate>2009-08-28T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>026707</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
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  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.026706" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Lattice Boltzmann model for wave propagation</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.026706</link>
    <description>Author(s): Jianying Zhang, Guangwu Yan, and Xiubo Shi&lt;br/&gt;A lattice Boltzmann model for two-dimensional wave equation is proposed by using the higher-order moment method. The higher-order moment method is based on the solution of a series of partial differential equations obtained by using multiscale technique and Chapman-Enskog expansion. In order to obta...&lt;br/&gt;[Phys. Rev. E 80, 026706] Published Thu Aug 27, 2009</description>
    <dc:creator>Jianying Zhang, Guangwu Yan, and Xiubo Shi</dc:creator>
    <dc:date>2009-08-27T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.026706</dc:identifier>
    <dc:source>Phys. Rev. E 80, 026706</dc:source>
    <dc:format>text/html</dc:format>
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    <prism:volume>80</prism:volume>
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    <prism:publicationDate>2009-08-27T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>026706</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
  </item>
  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.026705" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Reconstruction algorithm for single-particle diffraction imaging experiments</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.026705</link>
    <description>Author(s): Ne-Te Duane Loh and Veit Elser&lt;br/&gt;We introduce the EMC algorithm for reconstructing a particle&#8217;s three-dimensional (3D) diffraction intensity from very many photon shot-noise limited two-dimensional measurements, when the particle orientation in each measurement is unknown. The algorithm combines a maximization step (M) of the int...&lt;br/&gt;[Phys. Rev. E 80, 026705] Published Mon Aug 24, 2009</description>
    <dc:creator>Ne-Te Duane Loh and Veit Elser</dc:creator>
    <dc:date>2009-08-24T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.026705</dc:identifier>
    <dc:source>Phys. Rev. E 80, 026705</dc:source>
    <dc:format>text/html</dc:format>
    <dc:type>article</dc:type>
    <prism:publicationName>Physical Review E</prism:publicationName>
    <prism:volume>80</prism:volume>
    <prism:issueIdentifier>2</prism:issueIdentifier>
    <prism:publicationDate>2009-08-24T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>026705</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
  </item>
  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.026704" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Numerical solution of stochastic differential equations with Poisson and L&#233;vy white noise</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.026704</link>
    <description>Author(s): M. Grigoriu&lt;br/&gt;A fixed time step method is developed for integrating stochastic differential equations (SDE&#8217;s) with Poisson white noise (PWN) and L&#233;vy white noise (LWN). The method for integrating SDE&#8217;s with PWN has the same structure as that proposed by Kim [Phys. Rev. E 76, 011109 (2007)], but is establishe...&lt;br/&gt;[Phys. Rev. E 80, 026704] Published Fri Aug 21, 2009</description>
    <dc:creator>M. Grigoriu</dc:creator>
    <dc:date>2009-08-21T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.026704</dc:identifier>
    <dc:source>Phys. Rev. E 80, 026704</dc:source>
    <dc:format>text/html</dc:format>
    <dc:type>article</dc:type>
    <prism:publicationName>Physical Review E</prism:publicationName>
    <prism:volume>80</prism:volume>
    <prism:issueIdentifier>2</prism:issueIdentifier>
    <prism:publicationDate>2009-08-21T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>026704</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
  </item>
  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.025701" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Accelerated algorithm for computing the motion of solid particles suspended in fluid</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.025701</link>
    <description>Author(s): E. J. Ding&lt;br/&gt;A fast algorithm for computing the motion of solid particles suspended in fluid is presented. The motion of solid particles suspended in Stokes flow can be calculated without fully calculating the fluid motion. When the steady-state simulation is sufficient, this algorithm can greatly accelerate the...&lt;br/&gt;&lt;img src="http://prola.aps.org/graphics/rapid30x30.gif" width="30" height="30" alt="Rapid Communication"/&gt;&lt;br/&gt;[Phys. Rev. E 80, 025701] Published Wed Aug 19, 2009</description>
    <dc:creator>E. J. Ding</dc:creator>
    <dc:date>2009-08-19T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.025701</dc:identifier>
    <dc:source>Phys. Rev. E 80, 025701</dc:source>
    <dc:format>text/html</dc:format>
    <dc:type>article</dc:type>
    <prism:publicationName>Physical Review E</prism:publicationName>
    <prism:volume>80</prism:volume>
    <prism:issueIdentifier>2</prism:issueIdentifier>
    <prism:publicationDate>2009-08-19T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>025701</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
  </item>
  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.026703" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Jensen-Feynman approach to the statistics of interacting electrons</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.026703</link>
    <description>Author(s): Jean-Christophe Pain, Franck Gilleron, and G&#233;rald Faussurier&lt;br/&gt;Faussurier [Phys. Rev. E 65, 016403 (2001)] proposed to use a variational principle relying on Jensen-Feynman (or Gibbs-Bogoliubov) inequality in order to optimize the accounting for two-particle interactions in the calculation of canonical partition functions. It consists of a decomposition into a ...&lt;br/&gt;[Phys. Rev. E 80, 026703] Published Tue Aug 18, 2009</description>
    <dc:creator>Jean-Christophe Pain, Franck Gilleron, and G&#233;rald Faussurier</dc:creator>
    <dc:date>2009-08-18T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.026703</dc:identifier>
    <dc:source>Phys. Rev. E 80, 026703</dc:source>
    <dc:format>text/html</dc:format>
    <dc:type>article</dc:type>
    <prism:publicationName>Physical Review E</prism:publicationName>
    <prism:volume>80</prism:volume>
    <prism:issueIdentifier>2</prism:issueIdentifier>
    <prism:publicationDate>2009-08-18T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>026703</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
  </item>
  <item rdf:about="http://link.aps.org/doi/10.1103/PhysRevE.80.026702" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:dc="http://purl.org/dc/elements/1.1/">
    <title>Simple lattice Boltzmann subgrid-scale model for convectional flows with high Rayleigh numbers within an enclosed circular annular cavity</title>
    <link>http://link.aps.org/doi/10.1103/PhysRevE.80.026702</link>
    <description>Author(s): Sheng Chen, Jonas T&#246;lke, and Manfred Krafczyk&lt;br/&gt;Natural convection within an enclosed circular annular cavity formed by two concentric vertical cylinders is of fundamental interest and practical importance. Generally, the assumption of axisymmetric thermal flow is adopted for simulating such natural convections and the validity of the assumption ...&lt;br/&gt;[Phys. Rev. E 80, 026702] Published Tue Aug 11, 2009</description>
    <dc:creator>Sheng Chen, Jonas T&#246;lke, and Manfred Krafczyk</dc:creator>
    <dc:date>2009-08-11T00:00:00-04:00</dc:date>
    <dc:rights>Personal use only, all commercial or other reuse prohibited</dc:rights>
    <dc:identifier>10.1103/PhysRevE.80.026702</dc:identifier>
    <dc:source>Phys. Rev. E 80, 026702</dc:source>
    <dc:format>text/html</dc:format>
    <dc:type>article</dc:type>
    <prism:publicationName>Physical Review E</prism:publicationName>
    <prism:volume>80</prism:volume>
    <prism:issueIdentifier>2</prism:issueIdentifier>
    <prism:publicationDate>2009-08-11T00:00:00-04:00</prism:publicationDate>
    <prism:startingPage>026702</prism:startingPage>
    <dc:subject>Computational physics</dc:subject>
    <prism:section>Computational physics</prism:section>
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